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fMRI study update
Zhang LabZhang Lab 1258949228|%e %b %Y, %H:%M %Z|agohover
in discussion Lab users / Lab issues » fMRI study update

We have run eight subjects so far. Sometimes, the audio connections are completely dissembled at the MRI room. Make sure to check audio through headset. If no sound is delivered, check the cable connections and the setup on neidrui computer in the console room before sending the subject in the MRI scanner.

fMRI study update by Zhang LabZhang Lab, 1258949228|%e %b %Y, %H:%M %Z|agohover

Congratulations to Zach for receiving the UROP award for the fMRI study!

Zach received UROP award for fMRI study with Dr. Yang Zhang by Zhang LabZhang Lab, 1258948948|%e %b %Y, %H:%M %Z|agohover

AFNI and BrainVoyager will be installed on Zhanglab Mac (Intel-based 64 bit computer with 12 GB RAM, OS X 10.5) as of 11/21. BrainVoyager is still available on the Dell Precision Workstation as before. Running BrainVoyager requires the USB Key.

Other available brainimaging software on Mac: FSL, Freesurfer, MNE, SPM8, Matlab2008.

Dr. Philip Burton, co-investigator of the fMRI project on speech and voice processing, will give tutorials on fMRI data analysis.

AFNI and BrainVoyager installation on Mac by Zhang LabZhang Lab, 1258948691|%e %b %Y, %H:%M %Z|agohover
ASA SpringConference abstract due 11/16/2009
Yang Zhang (guest) 1258393428|%e %b %Y, %H:%M %Z|agohover
in discussion Lab users / Lab issues » ASA SpringConference abstract due 11/16/2009

Joint 159th ASA Meeting and Noise-Con 2010, Baltimore, Maryland, 19-23 April 2010

Partially overlaps with CNS 2010 meeting.

http://asa.aip.org/meetings.html

ASA SpringConference abstract due 11/16/2009 by Yang Zhang (guest), 1258393428|%e %b %Y, %H:%M %Z|agohover
EEG electrode digization
Zhang LabZhang Lab 1257573733|%e %b %Y, %H:%M %Z|agohover
in discussion Lab users / Lab issues » EEG electrode digization

Digitization using head surface points for adjustment was successful. Exporting was limited to 3d coordinates. Nasion, LPA, RPA, GRND are included in the exported file. For ASA, these four channels should be deleted from the .elc file. For MNE, nasion, LPA, RPA are required.

EEG electrode digization by Zhang LabZhang Lab, 1257573733|%e %b %Y, %H:%M %Z|agohover
fMRI Study
Zhang LabZhang Lab 1257573362|%e %b %Y, %H:%M %Z|agohover
in discussion Lab users / Lab issues » MRI test

MRI scans have very tight schedule. To save time, it is better to familiarize subjects with the screening, consent, payment, and handedness before they go to CMRR.

fMRI Study by Zhang LabZhang Lab, 1257573362|%e %b %Y, %H:%M %Z|agohover
ASA 4.7 upgrade on lab computers
Yang Zhang (guest) 1257111051|%e %b %Y, %H:%M %Z|agohover
in discussion Lab users / Lab issues » ASA 4.7 upgrade on lab computers

ASA4.7 upgrade is available through ANT web site. You can test all its features using the trial software on your own computer for up to 30 days.

The following lab computers have ASA4.7 installed, zhanglab02 (laptop), zhanglab03, zhanglab06, and zhang office computer.
Do not install any software (including official upgrade versions) on the lab computers without seeking permission. The upgrade versions (such as Windows 7 or Mac Snow Leopard) do not necessarily work with the current computer configuration and existing key software packages such as EEvoke, Eprime, Visual Studio, Matlab and toolboxes, etc.

ASA 4.7 upgrade on lab computers by Yang Zhang (guest), 1257111051|%e %b %Y, %H:%M %Z|agohover

This new format follows the popular monobook style. The program has not been tested with all major browsers. Firefox 3.0+ is recommended.

Re: Xsensor for electrode digitization
Yang Zhang (guest) 1256878309|%e %b %Y, %H:%M %Z|agohover
in discussion Lab users / Lab issues » Xsensor for electrode digitization

Xsensor issue solved with new stylus pen and configuration. An updated protocol is used including the measurements for the fudicial points.

Re: Xsensor for electrode digitization by Yang Zhang (guest), 1256878309|%e %b %Y, %H:%M %Z|agohover
Re: Lab Laundry
Yang (guest) 1250711526|%e %b %Y, %H:%M %Z|agohover
in discussion Guestbook / comments » Lab Laundry

I will get it done today.

Re: Lab Laundry by Yang (guest), 1250711526|%e %b %Y, %H:%M %Z|agohover
Lab Laundry
Zach (guest) 1250703443|%e %b %Y, %H:%M %Z|agohover
in discussion Guestbook / comments » Lab Laundry

I will bring some towels on Friday but until then we need fresh towels!

Lab Laundry by Zach (guest), 1250703443|%e %b %Y, %H:%M %Z|agohover
Re: EEG cap and electrode issues
James Stevens (guest) 1248814631|%e %b %Y, %H:%M %Z|agohover
in discussion Lab users / Lab issues » EEG cap and electrode issues

On July 28th - red cap required fastfix for electrode C1.

Re: EEG cap and electrode issues by James Stevens (guest), 1248814631|%e %b %Y, %H:%M %Z|agohover
Re: eevoke issues
Yang Zhang (guest) 1248582766|%e %b %Y, %H:%M %Z|agohover
in discussion Lab users / Lab issues » eevoke issues

The eevoke program might not be able to close itself. So please check the running processes after a couple of runs to see if there are multiple eevoke.exe running. If yes, you need to close all of them before running a new one. Sometimes, the input configuration for eevoke can be lost due to computer upgrade, new software installation or program crash. You need to make sure the button codes show up properly in the recording window in ASA . For technical support on eevoke, please ask Tess.

Re: eevoke issues by Yang Zhang (guest), 1248582766|%e %b %Y, %H:%M %Z|agohover
eevoke issues
Zach (guest) 1247956885|%e %b %Y, %H:%M %Z|agohover
in discussion Lab users / Lab issues » eevoke issues

Be advised: For some reason eevoke will randomly begin opening itself 20 - 30 times. After opening an eevoke file, eevoke usually closes itself but a few times I would return from the booth to find that a number of eevoke programs are running. When this happens I press "Cnt+Alt+Dlt" and go "processes" organize alphabetically and "End Process" each of the open eevokes.

Note: Sometime when doing this the "left" and "right" arrow key used for response by the participant becomes unbound in eevoke. To fix this you must open eevoke and rebind the "left" and "right" keys withe the "hit left" and "hit right" options.

eevoke issues by Zach (guest), 1247956885|%e %b %Y, %H:%M %Z|agohover
Re: Xsensor for electrode digitization
Yang Zhang (guest) 1247898990|%e %b %Y, %H:%M %Z|agohover
in discussion Lab users / Lab issues » Xsensor for electrode digitization

This problem is partially solved with ANT technical support. The final solution will be here soon. The previous data sets recorded using Xsensor system worked fine with MNE and dipole analysis. The new ASA4.6 version had some noticeable problems with the new interface for the NDI probe tool configuration. I am working with Jaap at ANT on this issue.

Re: Xsensor for electrode digitization by Yang Zhang (guest), 1247898990|%e %b %Y, %H:%M %Z|agohover
Re: Signficant noise today with multi-colored cap
Yang Zhang (guest) 1247673619|%e %b %Y, %H:%M %Z|agohover
in discussion Lab users / Lab issues » 60 Hz interference?

It is better to apply notch filtering and low pass filtering before running artefact rejection. Disabling electrodes are not recommended unless the electrodes are bad (extremely high impedance, for instance).

Re: Signficant noise today with multi-colored cap by Yang Zhang (guest), 1247673619|%e %b %Y, %H:%M %Z|agohover
Signficant noise today with multi-colored cap
James Stevens (guest) 1247515907|%e %b %Y, %H:%M %Z|agohover
in discussion Lab users / Lab issues » 60 Hz interference?

Today, July 13th, I ran an experiment in which there was significant noise in the frontal channels (prefixes F and AF). When I ran analysis on it, artefact detection rejected all the trials unless I manually disable several frontal channels. After these noisy frontal channels were disabled, (nearly) all the trials were accepted.

Signficant noise today with multi-colored cap by James Stevens (guest), 1247515907|%e %b %Y, %H:%M %Z|agohover

Blue cap on July 2nd showed good impedences from all electrodes except for C6. Quick fix was applied, and the impedence dropped immediately to < 15 mOhms

Re: EEG cap and electrode issues by James StevensJames Stevens, 1246553801|%e %b %Y, %H:%M %Z|agohover
Re: EEG cap and electrode issues
Zhang LabZhang Lab 1246552144|%e %b %Y, %H:%M %Z|agohover
in discussion Lab users / Lab issues » EEG cap and electrode issues

The P8 channel looked fine during a test on July 1, 2009. If there are problems with one or two electrodes for an experiment, we can apply the quick fix solution. Please consult with lab manager about the quick fix solution.

Re: EEG cap and electrode issues by Zhang LabZhang Lab, 1246552144|%e %b %Y, %H:%M %Z|agohover
Re: EEG cap and electrode issues
James Stevens (guest) 1246374273|%e %b %Y, %H:%M %Z|agohover
in discussion Lab users / Lab issues » EEG cap and electrode issues

During an experiment on June 29th, the multi-colored cap showed P8 not to be giving a signal. The impedence did not lower at all.

Re: EEG cap and electrode issues by James Stevens (guest), 1246374273|%e %b %Y, %H:%M %Z|agohover
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